# layer_orders

data_key: std_coverage
data_type: newick
data_value:
(F_TAG:0.0315991,(M_Rainbow:0.021851,((F_SnakePit:0.0115796,M_TAG:0.0115796)0:0.0157109,(F_Rainbow:0.0136388,M_SnakePit:0.0136388)0:0.0157109)0:0.021851)0:0.0315991);


data_key: mean_coverage
data_type: newick
data_value:
((F_SnakePit:0.0172571,F_TAG:0.0172571)0:0.0417327,((M_SnakePit:0.0242445,M_TAG:0.0242445)0:0.0284283,(F_Rainbow:0.0269383,M_Rainbow:0.0269383)0:0.0284283)0:0.0417327);


data_key: mean_coverage_Q2Q3
data_type: newick
data_value:
((F_Rainbow:0.0308733,(F_SnakePit:0.0177712,F_TAG:0.0177712)0:0.0308733)0:0.0414105,(M_Rainbow:0.0379275,(M_SnakePit:0.024362,M_TAG:0.024362)0:0.0379275)0:0.0414105);


data_key: max_normalized_ratio
data_type: newick
data_value:
((F_Rainbow:0.0116519,M_Rainbow:0.0116519)0:0.0205723,(M_TAG:0.0172514,(M_SnakePit:0.0126879,(F_SnakePit:0.00838136,F_TAG:0.00838136)0:0.0126879)0:0.0172514)0:0.0205723);


data_key: relative_abundance
data_type: newick
data_value:
((F_Rainbow:0.0140732,M_Rainbow:0.0140732)0:0.0231089,(M_TAG:0.0198109,(M_SnakePit:0.0161891,(F_SnakePit:0.0102026,F_TAG:0.0102026)0:0.0161891)0:0.0198109)0:0.0231089);


data_key: detection
data_type: newick
data_value:
((F_Rainbow:0.0053362,M_Rainbow:0.0053362)0:0.0145584,(M_TAG:0.00757006,(M_SnakePit:0.00569524,(F_SnakePit:0.00401816,F_TAG:0.00401816)0:0.00569524)0:0.00757006)0:0.0145584);


data_key: variability
data_type: newick
data_value:
((M_SnakePit:0.0304105,M_TAG:0.0304105)0:0.0506092,(M_Rainbow:0.0339975,(F_Rainbow:0.0261289,(F_SnakePit:0.0127089,F_TAG:0.0127089)0:0.0261289)0:0.0339975)0:0.0506092);


# collections_info

collection_name: MAGs
bin_names:
F_Rainbow_MAG_00001,F_Rainbow_MAG_00002,F_SnakePit_MAG_00001,F_SnakePit_MAG_00002,F_SnakePit_MAG_00003,F_SnakePit_MAG_00004,F_SnakePit_MAG_00005,F_SnakePit_MAG_00006,F_TAG_MAG_00001,F_TAG_MAG_00002,F_TAG_MAG_00003,M_Rainbow_MAG_00001,M_Rainbow_MAG_00002,M_Rainbow_MAG_00003,M_SnakePit_MAG_00001,M_SnakePit_MAG_00002,M_TAG_MAG_00001,M_TAG_MAG_00002,M_TAG_MAG_00003,M_TAG_MAG_00004


# states

name: default
last_modified: 26.08.2020 12:24:02
content:
{
    "version": "3",
    "tree-type": "circlephylogram",
    "order-by": "gtdbtk_bac120.user_msa_anvio_clean.fasta:unknown:unknown",
    "current-view": "mean_coverage",
    "angle-min": "0",
    "angle-max": "270",
    "tree-radius": "2560",
    "tree-height": "0",
    "tree-width": "0",
    "layer-margin": "15",
    "outer-ring-height": "60",
    "outer-ring-margin": "30",
    "edge-normalization": false,
    "custom-layer-margin": false,
    "show-grid-for-bins": false,
    "grid-color": "#FFFFFF",
    "grid-width": "1",
    "samples-order": "custom",
    "max-font-size": "60",
    "optimize-speed": true,
    "show-bin-labels": true,
    "begins-from-branch": false,
    "bin-labels-font-size": "128",
    "autorotate-bin-labels": true,
    "estimate-taxonomy": false,
    "bin-labels-angle": "0",
    "background-opacity": "0.3",
    "max-font-size-label": "120",
    "draw-guide-lines": "no",
    "layer-order": [
        "length",
        "gc_content",
        "F_Rainbow",
        "F_SnakePit",
        "F_TAG",
        "M_Rainbow",
        "M_SnakePit",
        "M_TAG",
        "percent_completion",
        "percent_redundancy",
        "matching_domain",
        "bin_name",
        "source"
    ],
    "categorical_data_colors": {
        "matching_domain": {
            "bacteria (0.9)": "#060fc9",
            "bacteria (0.6)": "#ed1249",
            "bacteria (1.0)": "#dafc74",
            "bacteria (0.8)": "#ccdeff",
            "bacteria (0.5)": "#1054a3",
            "bacteria (0.7)": "#baaaef"
        },
        "bin_name": {
            "F_Rainbow_MAG_00001": "#d5c0f9",
            "F_Rainbow_MAG_00002": "#f75ba6",
            "F_SnakePit_MAG_00001": "#f9a7c2",
            "F_SnakePit_MAG_00002": "#6afc64",
            "F_SnakePit_MAG_00003": "#f7985d",
            "F_SnakePit_MAG_00004": "#c450d8",
            "F_SnakePit_MAG_00005": "#f733d0",
            "F_SnakePit_MAG_00006": "#f4a6c1",
            "F_TAG_MAG_00001": "#aef4a1",
            "F_TAG_MAG_00002": "#232a89",
            "F_TAG_MAG_00003": "#b2fff8",
            "M_Rainbow_MAG_00001": "#0d08aa",
            "M_Rainbow_MAG_00002": "#e87ac1",
            "M_Rainbow_MAG_00003": "#73a009",
            "M_SnakePit_MAG_00001": "#7e4eb7",
            "M_SnakePit_MAG_00002": "#3c65a3",
            "M_TAG_MAG_00001": "#ce5866",
            "M_TAG_MAG_00002": "#db4899",
            "M_TAG_MAG_00003": "#1fad6d",
            "M_TAG_MAG_00004": "#fcc7d9"
        },
        "source": {
            "UNKNOWN": "#F0F0F0"
        }
    },
    "stack_bar_colors": {},
    "layers": {
        "length": {
            "color": "#414141",
            "height": "180",
            "margin": "15",
            "type": "bar",
            "color-start": "#EEEEEE"
        },
        "gc_content": {
            "color": "#004a0f",
            "height": "180",
            "margin": "15",
            "type": "bar",
            "color-start": "#EEEEEE"
        },
        "F_Rainbow": {
            "color": "#ed8080",
            "height": "180",
            "margin": "15",
            "type": "intensity",
            "color-start": "#eeeeee"
        },
        "F_SnakePit": {
            "color": "#ed8080",
            "height": "180",
            "margin": "15",
            "type": "intensity",
            "color-start": "#EEEEEE"
        },
        "F_TAG": {
            "color": "#ed8080",
            "height": "180",
            "margin": "15",
            "type": "intensity",
            "color-start": "#EEEEEE"
        },
        "M_Rainbow": {
            "color": "#574fc2",
            "height": "180",
            "margin": "15",
            "type": "intensity",
            "color-start": "#EEEEEE"
        },
        "M_SnakePit": {
            "color": "#574fc2",
            "height": "180",
            "margin": "15",
            "type": "intensity",
            "color-start": "#EEEEEE"
        },
        "M_TAG": {
            "color": "#574fc2",
            "height": "180",
            "margin": "15",
            "type": "intensity",
            "color-start": "#EEEEEE"
        },
        "percent_completion": {
            "color": "#000000",
            "height": "180",
            "margin": "15",
            "type": "bar",
            "color-start": "#EEEEEE"
        },
        "percent_redundancy": {
            "color": "#000000",
            "height": "180",
            "margin": "15",
            "type": "bar",
            "color-start": "#EEEEEE"
        },
        "matching_domain": {
            "color": "#000000",
            "height": "0",
            "margin": "15",
            "type": "color",
            "color-start": "#DDDDDD"
        },
        "bin_name": {
            "color": "#000000",
            "height": "0",
            "margin": "15",
            "type": "text",
            "color-start": "#DDDDDD"
        },
        "source": {
            "color": "#000000",
            "height": "0",
            "margin": "15",
            "type": "color",
            "color-start": "#DDDDDD"
        }
    },
    "views": {
        "mean_coverage": {
            "length": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "2470810",
                    "disabled": false
                }
            },
            "gc_content": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "0.47601485432015844",
                    "disabled": false
                }
            },
            "F_Rainbow": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "76.85794651562554",
                    "disabled": false
                }
            },
            "F_SnakePit": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "35.3286904110943",
                    "disabled": false
                }
            },
            "F_TAG": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "121.49997550850257",
                    "disabled": false
                }
            },
            "M_Rainbow": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "90.96727905269097",
                    "disabled": false
                }
            },
            "M_SnakePit": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "33.026045626986445",
                    "disabled": false
                }
            },
            "M_TAG": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "52.61442384383779",
                    "disabled": false
                }
            },
            "percent_completion": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "100",
                    "disabled": false
                }
            },
            "percent_redundancy": {
                "normalization": "none",
                "min": {
                    "value": "0",
                    "disabled": false
                },
                "max": {
                    "value": "100",
                    "disabled": false
                }
            },
            "matching_domain": {
                "min": {
                    "disabled": false
                },
                "max": {
                    "disabled": false
                }
            },
            "bin_name": {
                "min": {
                    "disabled": false
                },
                "max": {
                    "disabled": false
                }
            },
            "source": {
                "min": {
                    "disabled": false
                },
                "max": {
                    "disabled": false
                }
            }
        }
    },
    "samples-categorical-colors": {},
    "samples-stack-bar-colors": {
        "default": {
            "families!;Cardiobacteriaceae;GCA-2747515;Hepatoplasmataceae;Mucispirillaceae;Sulfurovaceae;UBA3375;UBA5962": {
                "": "#2f3fa8",
                "Cardiobacteriaceae": "#cd5d39",
                "GCA-2747515": "#b49041",
                "Hepatoplasmataceae": "#c85979",
                "Mucispirillaceae": "#4aad91",
                "Sulfurovaceae": "#747dc9",
                "UBA3375": "#b65cbf",
                "UBA5962": "#70a845"
            }
        }
    },
    "samples-edge-length-normalization": true,
    "samples-ignore-branch-length": false,
    "samples-tree-height": "400",
    "samples-layer-order": [
        {
            "layer_name": "total_reads_kept",
            "group": "default"
        },
        {
            "layer_name": "percent_mapped",
            "group": "default"
        },
        {
            "layer_name": "num_SNVs_reported",
            "group": "default"
        },
        {
            "layer_name": "total_reads_mapped",
            "group": "default"
        },
        {
            "layer_name": "total_num_reads",
            "group": "default"
        },
        {
            "layer_name": "families!;Cardiobacteriaceae;GCA-2747515;Hepatoplasmataceae;Mucispirillaceae;Sulfurovaceae;UBA3375;UBA5962",
            "group": "default"
        }
    ],
    "samples-layers": {
        "default": {
            "total_reads_kept": {
                "data-type": "numeric",
                "height": 0,
                "margin": 0,
                "normalization": "none",
                "color": "#919191",
                "min": {
                    "value": 0,
                    "disabled": false
                },
                "max": {
                    "value": 2299989,
                    "disabled": false
                },
                "type": "bar",
                "color-start": "#EFEFEF"
            },
            "percent_mapped": {
                "data-type": "numeric",
                "height": 500,
                "margin": 15,
                "normalization": "none",
                "color": "#919191",
                "min": {
                    "value": 0,
                    "disabled": false
                },
                "max": {
                    "value": 2.60840207980007,
                    "disabled": false
                },
                "type": "bar",
                "color-start": "#EFEFEF"
            },
            "num_SNVs_reported": {
                "data-type": "numeric",
                "height": 0,
                "margin": 0,
                "normalization": "none",
                "color": "#919191",
                "min": {
                    "value": 0,
                    "disabled": false
                },
                "max": {
                    "value": 75217,
                    "disabled": false
                },
                "type": "bar",
                "color-start": "#EFEFEF"
            },
            "total_reads_mapped": {
                "data-type": "numeric",
                "height": 500,
                "margin": 15,
                "normalization": "none",
                "color": "#919191",
                "min": {
                    "value": 0,
                    "disabled": false
                },
                "max": {
                    "value": 2299989,
                    "disabled": false
                },
                "type": "bar",
                "color-start": "#EFEFEF"
            },
            "total_num_reads": {
                "data-type": "numeric",
                "height": 500,
                "margin": 15,
                "normalization": "none",
                "color": "#919191",
                "min": {
                    "value": 0,
                    "disabled": false
                },
                "max": {
                    "value": 94227064,
                    "disabled": false
                },
                "type": "bar",
                "color-start": "#EFEFEF"
            },
            "families!;Cardiobacteriaceae;GCA-2747515;Hepatoplasmataceae;Mucispirillaceae;Sulfurovaceae;UBA3375;UBA5962": {
                "data-type": "stack-bar",
                "height": 500,
                "margin": 15,
                "normalization": "none",
                "min": {
                    "value": null,
                    "disabled": false
                },
                "max": {
                    "value": null,
                    "disabled": false
                }
            }
        }
    },
    "samples-groups": {
        "default": true
    }
}


